SELECT 
  cscart_product_prices.product_id, 
  COALESCE(
    cscart_master_products_storefront_min_price.price, 
    MIN(
      IF(
        cscart_product_prices.percentage_discount = 0, 
        cscart_product_prices.price, 
        cscart_product_prices.price - (
          cscart_product_prices.price * cscart_product_prices.percentage_discount
        )/ 100
      )
    )
  ) AS price 
FROM 
  cscart_product_prices 
  LEFT JOIN cscart_master_products_storefront_min_price ON cscart_master_products_storefront_min_price.product_id = cscart_product_prices.product_id 
  AND cscart_master_products_storefront_min_price.storefront_id = 1 
WHERE 
  cscart_product_prices.product_id IN (
    66183, 64396, 65422, 65423, 65426, 65427, 
    65428, 65429, 65430, 65431, 65432, 
    65434, 65435, 65436, 65438, 65439, 
    65440, 65441, 65442, 65443, 65444, 
    65445, 65446, 65447
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00207

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "5.14"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_master_products_storefront_min_price",
            "access_type": "system",
            "possible_keys": [
              "PRIMARY"
            ],
            "rows_examined_per_scan": 0,
            "rows_produced_per_join": 1,
            "filtered": "0.00",
            "const_row_not_found": true,
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "0.10",
              "prefix_cost": "0.00",
              "data_read_per_join": "16"
            },
            "used_columns": [
              "storefront_id",
              "product_id",
              "price"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_product_prices",
            "access_type": "range",
            "possible_keys": [
              "usergroup",
              "product_id",
              "lower_limit",
              "usergroup_id",
              "idx_product_prices_usergroup_limit",
              "idx_prices_discount_lookup",
              "idx_prices_min_calc",
              "idx_prices_usergroup_lookup",
              "idx_prices_usergroup_product"
            ],
            "key": "idx_prices_discount_lookup",
            "used_key_parts": [
              "product_id",
              "lower_limit"
            ],
            "key_length": "6",
            "rows_examined_per_scan": 24,
            "rows_produced_per_join": 4,
            "filtered": "20.00",
            "using_index": true,
            "cost_info": {
              "read_cost": "4.66",
              "eval_cost": "0.48",
              "prefix_cost": "5.14",
              "data_read_per_join": "115"
            },
            "used_columns": [
              "product_id",
              "price",
              "percentage_discount",
              "lower_limit",
              "usergroup_id"
            ],
            "attached_condition": "((`cscart_db`.`cscart_product_prices`.`lower_limit` = 1) and (`cscart_db`.`cscart_product_prices`.`product_id` in (66183,64396,65422,65423,65426,65427,65428,65429,65430,65431,65432,65434,65435,65436,65438,65439,65440,65441,65442,65443,65444,65445,65446,65447)) and (`cscart_db`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
          }
        }
      ]
    }
  }
}